STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB56266.1Hypothetical protein. (446 aa)    
Predicted Functional Partners:
SKB56277.1
Cysteine-rich domain-containing protein.
   
 0.992
SKB75577.1
Glutamate synthase (ferredoxin).
    
 0.912
SKB47638.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
 
 
 0.891
SKB56250.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
       0.835
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
  0.820
SKC00329.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
 
 0.818
SKB43390.1
Uncharacterised ACR, YkgG family COG1556.
  
 
 0.797
SKB47783.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.796
SKB60427.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
  
  
  0.763
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.751
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.