Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB34827.1 | SKB35157.1 | SAMN05660903_00259 | SAMN05660903_00284 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
SKB34827.1 | SKB51155.1 | SAMN05660903_00259 | SAMN05660903_01160 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
SKB34827.1 | SKB58760.1 | SAMN05660903_00259 | SAMN05660903_01524 | PAS domain S-box-containing protein. | Two-component system, chemotaxis family, CheB/CheR fusion protein. | 0.999 |
SKB34827.1 | SKB60376.1 | SAMN05660903_00259 | SAMN05660903_01620 | PAS domain S-box-containing protein. | Hypothetical protein. | 0.841 |
SKB34827.1 | SKB72555.1 | SAMN05660903_00259 | SAMN05660903_02243 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
SKB34827.1 | SKB95699.1 | SAMN05660903_00259 | SAMN05660903_03478 | PAS domain S-box-containing protein. | Two component regulator propeller. | 0.999 |
SKB34827.1 | SKB97022.1 | SAMN05660903_00259 | SAMN05660903_03552 | PAS domain S-box-containing protein. | PAS domain S-box-containing protein. | 0.999 |
SKB34827.1 | ribB | SAMN05660903_00259 | SAMN05660903_02595 | PAS domain S-box-containing protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.953 |
SKB35157.1 | SKB34827.1 | SAMN05660903_00284 | SAMN05660903_00259 | Signal transduction histidine kinase. | PAS domain S-box-containing protein. | 0.999 |
SKB35157.1 | SKB51155.1 | SAMN05660903_00284 | SAMN05660903_01160 | Signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.999 |
SKB35157.1 | SKB58760.1 | SAMN05660903_00284 | SAMN05660903_01524 | Signal transduction histidine kinase. | Two-component system, chemotaxis family, CheB/CheR fusion protein. | 0.999 |
SKB35157.1 | SKB60376.1 | SAMN05660903_00284 | SAMN05660903_01620 | Signal transduction histidine kinase. | Hypothetical protein. | 0.768 |
SKB35157.1 | SKB72555.1 | SAMN05660903_00284 | SAMN05660903_02243 | Signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.999 |
SKB35157.1 | SKB95699.1 | SAMN05660903_00284 | SAMN05660903_03478 | Signal transduction histidine kinase. | Two component regulator propeller. | 0.999 |
SKB35157.1 | SKB97022.1 | SAMN05660903_00284 | SAMN05660903_03552 | Signal transduction histidine kinase. | PAS domain S-box-containing protein. | 0.999 |
SKB35157.1 | ribB | SAMN05660903_00284 | SAMN05660903_02595 | Signal transduction histidine kinase. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.908 |
SKB38422.1 | SKB60376.1 | SAMN05660903_00519 | SAMN05660903_01620 | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | Hypothetical protein. | 0.483 |
SKB51155.1 | SKB34827.1 | SAMN05660903_01160 | SAMN05660903_00259 | Signal transduction histidine kinase. | PAS domain S-box-containing protein. | 0.999 |
SKB51155.1 | SKB35157.1 | SAMN05660903_01160 | SAMN05660903_00284 | Signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.999 |
SKB51155.1 | SKB58760.1 | SAMN05660903_01160 | SAMN05660903_01524 | Signal transduction histidine kinase. | Two-component system, chemotaxis family, CheB/CheR fusion protein. | 0.999 |
page 1 of 4