STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB64211.1Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (557 aa)    
Predicted Functional Partners:
SKB64391.1
Lysophospholipase L1.
 
  0.980
SKB64155.1
Pectinesterase.
 
  
 0.976
SKB64140.1
Unsaturated rhamnogalacturonyl hydrolase.
  
  0.967
SKB64175.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
  0.933
SKB64164.1
Protein of unknown function.
 
  
  0.930
SKB64376.1
Pectinesterase.
 
  
 0.917
SKB51431.1
Lysophospholipase L1.
  0.896
SKB64130.1
Pectate lyase, PelA/Pel-15E family.
 
 
  0.896
SKB51406.1
Lysophospholipase L1.
 
 
  0.852
SKB64122.1
Starch-binding associating with outer membrane.
 
 
   0.787
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.