STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB65881.1Hypothetical protein. (185 aa)    
Predicted Functional Partners:
SKB65889.1
Hypothetical protein.
       0.769
SKB65876.1
Inorganic pyrophosphatase.
       0.768
SKB94711.1
Hypothetical protein.
  
     0.723
SKB58412.1
Hypothetical protein.
  
     0.720
SKB82335.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.710
SKB44221.1
Hypothetical protein.
  
     0.688
SKB92974.1
Protein of unknown function.
  
     0.678
SKB36480.1
Hypothetical protein.
  
     0.660
SKC00136.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.657
SKC00173.1
Hypothetical protein.
  
     0.644
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.