STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB67857.1Glycosyltransferase involved in cell wall bisynthesis. (367 aa)    
Predicted Functional Partners:
SKB67826.1
CDP-paratose 2-epimerase.
 
 
  0.959
SKB67864.1
Spore maturation protein CgeB.
    0.957
SKB67817.1
dTDP-L-rhamnose 4-epimerase.
 
 
  0.955
SKB67888.1
Spore maturation protein CgeB.
 
    0.952
SKB67837.1
Threonine dehydrogenase.
 
    0.949
SKB67898.1
Spore maturation protein CgeB.
 
    0.946
SKB67907.1
tRNA (mo5U34)-methyltransferase.
 
     0.943
SKB67849.1
Predicted dehydrogenase.
 
    0.942
SKB67934.1
Hypothetical protein.
 
     0.924
SKB67981.1
Predicted dehydrogenase.
 
    0.827
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.