STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB75540.11-aminocyclopropane-1-carboxylate deaminase. (312 aa)    
Predicted Functional Partners:
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
    
  0.909
SKB75553.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
      0.905
SKB75531.1
Hypothetical protein.
       0.759
SKB75523.1
Uncharacterized lipoprotein NlpE involved in copper resistance.
 
     0.481
SKB75503.1
Protein of unknown function.
 
     0.480
SKB54896.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.454
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.