STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB85289.1Hypothetical protein. (310 aa)    
Predicted Functional Partners:
SKB37115.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
    
   0.426
SKB42115.1
Outer membrane protein TolC.
    
   0.426
SKB42187.1
Outer membrane efflux protein.
    
   0.426
SKB48108.1
Outer membrane protein.
    
   0.426
SKB49455.1
Outer membrane protein TolC.
    
   0.426
SKB49986.1
Outer membrane protein.
    
   0.426
SKB63459.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
   0.426
SKB82153.1
Outer membrane protein TolC.
    
   0.426
SKB96355.1
Outer membrane protein TolC.
    
   0.426
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.