STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB85325.1Starch-binding associating with outer membrane. (597 aa)    
Predicted Functional Partners:
SKB85335.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.952
SKB85318.1
F5/8 type C domain-containing protein.
 
     0.855
SKB53896.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.791
SKB63545.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.787
SKB35458.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.774
SKB97805.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.730
SKB63586.1
Pilus formation protein N terminal region.
  
     0.701
SKB64113.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.683
SKB51142.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.682
SKB80096.1
Iron complex outermembrane recepter protein.
  
 
   0.677
Your Current Organism:
Salegentibacter salinarum
NCBI taxonomy Id: 447422
Other names: CCUG 54354, DSM 23400, KCTC 12975, S. salinarum, Salegentibacter salinarum Yoon et al. 2008, strain ISL-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.