STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM07375.1Protein of unknown function. (211 aa)    
Predicted Functional Partners:
SHM07411.1
Stage II sporulation protein P.
     0.992
SHM07481.1
Protein of unknown function.
 
     0.923
SHM07442.1
Protein of unknown function.
 
     0.887
SHM68321.1
Predicted amino acid dehydrogenase.
  
     0.749
SHM68351.1
Hypothetical protein.
  
     0.740
SHM21556.1
Stage II sporulation protein D.
  
     0.735
SHM20207.1
MobA-like NTP transferase domain-containing protein.
  
     0.731
SHM68380.1
Helix-turn-helix.
  
     0.707
SHM07927.1
Hypothetical protein.
  
     0.692
SHM49312.1
Hypothetical protein.
  
     0.670
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.