STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM09950.1Two-component system, CitB family, response regulator MalR. (221 aa)    
Predicted Functional Partners:
SHM09921.1
Two-component system, CitB family, sensor histidine kinase DctS.
 0.997
SHM61769.1
Sensor_kinase_SpoOB-type, alpha-helical domain.
  
 0.834
SHM09974.1
Citrate carrier protein, CCS family.
 
    0.824
SHM10908.1
Flagellar motor switch protein FliN/FliY.
  
 
  0.792
SHM56643.1
Two-component system, chemotaxis family, response regulator CheY.
  
  
 0.758
SHM77669.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  
 0.722
SHM72751.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
 0.706
SHM74032.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
 0.602
SHM39200.1
Two-component system, sensor histidine kinase YcbA.
 
  
 0.592
cheD
Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
    
  0.554
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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