STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM17047.1YycH protein. (282 aa)    
Predicted Functional Partners:
SHM17077.1
Two-component signal transduction system YycFG, regulatory protein YycH.
 
  
 0.981
SHM17145.1
PAS/PAC sensor signal transduction histidine kinase.
 
  
 0.813
SHM77753.1
S-layer homology domain-containing protein.
  
     0.766
SHM29335.1
Copper amine oxidase N-terminal domain-containing protein.
  
     0.763
SHM58585.1
Hypothetical protein.
  
     0.753
SHM29722.1
S-layer homology domain-containing protein.
  
     0.743
SHM87576.1
Tetratricopeptide repeat-containing protein.
  
     0.734
SHM77731.1
S-layer homology domain-containing protein.
  
     0.713
SHM17108.1
Hypothetical protein.
       0.711
SHM63773.1
Copper amine oxidase N-terminal domain-containing protein.
  
     0.693
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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