STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM17758.1Small conductance mechanosensitive channel. (282 aa)    
Predicted Functional Partners:
SHM17708.1
Hypothetical protein.
  
    0.838
SHM17794.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
       0.781
SHM17837.1
Uncharacterized membrane protein, required for colicin V production.
       0.734
SHM17640.1
Single-strand binding protein.
       0.670
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
       0.670
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.651
SHM17871.1
Putative sporulation protein YyaC.
       0.611
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
       0.568
SHM17561.1
Uncharacterized conserved protein YybS, DUF2232 family.
       0.568
SHM17523.1
c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains.
       0.560
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.