STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM18888.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
SHM18854.1
Uncharacterized protein YaaQ.
  
    0.896
SHM18951.1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
  
  
 0.876
SHM18919.1
DNA polymerase-3 subunit delta'.
 
     0.863
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.787
SHM18791.1
Arginine/lysine/ornithine decarboxylase.
  
    0.773
SHM38713.1
Flagellar operon protein TIGR03826.
 
     0.758
SHM10908.1
Flagellar motor switch protein FliN/FliY.
 
    0.749
SHM38633.1
FlgN protein.
 
     0.747
SHM62286.1
Cell division protein FtsA.
  
     0.724
SHM36628.1
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
    0.697
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.