STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM20788.1Tryptophan transporter TrpP. (173 aa)    
Predicted Functional Partners:
SHM29591.1
Anthranilate synthase, component II.
   
  
 0.564
SHM20821.1
RNA-binding protein YlmH, contains S4-like domain.
       0.516
SHM20855.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.468
SHM20885.1
Soluble P-type ATPase.
       0.468
SHM17561.1
Uncharacterized conserved protein YybS, DUF2232 family.
  
     0.418
SHM68496.1
Uncharacterized membrane protein.
  
     0.402
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.