STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM27308.1Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains. (226 aa)    
Predicted Functional Partners:
SHM27275.1
2-iminobutanoate/2-iminopropanoate deaminase.
 
  
 0.806
SHM27245.1
Threonine dehydratase.
       0.729
SHM27216.1
L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
    0.674
SHM27183.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
    0.634
SHM27343.1
Glucokinase.
       0.495
SHM27374.1
Fructose-bisphosphate aldolase.
       0.466
SHM27148.1
Na+/H+-dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.462
SHM93108.1
L-serine dehydratase, iron-sulfur-dependent, beta subunit.
 
    0.402
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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