STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM28023.1D-serine deaminase, pyridoxal phosphate-dependent. (372 aa)    
Predicted Functional Partners:
SHM27245.1
Threonine dehydratase.
    
 0.892
SHM26588.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
  0.753
SHM27986.1
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase.
       0.546
SHM88332.1
Propionaldehyde dehydrogenase.
   
 
 0.540
SHM28051.1
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
    0.477
SHM27958.1
acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
       0.447
SHM74445.1
methylmalonyl-CoA mutase C-terminal domain-containing protein.
  
     0.408
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.