STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM29133.1TRAP-type C4-dicarboxylate transport system, small permease component. (154 aa)    
Predicted Functional Partners:
SHM29101.1
TRAP transporter, DctM subunit.
 
 0.967
SHM28944.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.929
SHM16467.1
TRAP transporter, DctM subunit.
 
 0.853
SHM80412.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.840
SHM16496.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.802
SHM29165.1
Fructuronate reductase.
       0.776
SHM37413.1
TRAP transporter, DctM subunit.
 
 0.774
SHM29070.1
L-gulonate 5-dehydrogenase.
 
  
 0.754
SHM80442.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.739
SHM80468.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.739
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.