STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM34011.1Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (544 aa)    
Predicted Functional Partners:
SHM63243.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
  
 0.998
SHM63268.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
 
 0.995
SHM34043.1
Molybdopterin oxidoreductase.
     0.994
SHM46671.1
NADH-quinone oxidoreductase subunit F.
 
 0.994
SHM33946.1
Carbon-monoxide dehydrogenase iron sulfur subunit.
 
 0.975
SHM31094.1
CoA-disulfide reductase.
   
  0.973
SHM63416.1
Iron only hydrogenase large subunit, C-terminal domain.
   
 0.967
SHM33917.1
Ni-dependent carbon monoxide dehydrogenase precursor.
   
 0.946
SHM63343.1
NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein.
 
 0.937
SHM46704.1
NADH dehydrogenase subunit E.
 
 0.922
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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