STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM34506.1Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-); Belongs to the binding-protein-dependent transport system permease family. (345 aa)    
Predicted Functional Partners:
SHM34536.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
 
 0.995
SHM34559.1
Protein of unknown function.
 
 
 0.954
SHM34474.1
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-); Belongs to the binding-protein-dependent transport system permease family.
 
    
0.856
sspI
Small acid-soluble spore protein I (minor); Belongs to the SspI family.
       0.511
SHM44390.1
PTS system, N-acetylglucosamine-specific IIC component.
   
  
 0.416
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.