STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM34883.1Na+:H+ antiporter, NhaC family. (462 aa)    
Predicted Functional Partners:
SHM34789.1
Cysteine synthase.
     
 0.774
SHM34820.1
Hypothetical protein.
       0.773
SHM34857.1
4-hydroxy-tetrahydrodipicolinate reductase.
       0.773
SHM34729.1
D-ornithine 4,5-aminomutase E subunit.
       0.762
SHM34759.1
D-ornithine 4,5-aminomutase S subunit.
       0.762
SHM34702.1
Conserved hypothetical protein.
  
    0.529
SHM34913.1
Arginine utilization protein RocB.
       0.434
SHM34673.1
Hypothetical protein.
       0.419
sfsA
Sugar fermentation stimulation protein A; Belongs to the SfsA family.
       0.414
SHM82726.1
NRAMP (natural resistance-associated macrophage protein) metal ion transporters.
 
     0.406
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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