STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM36054.1Hypothetical protein. (274 aa)    
Predicted Functional Partners:
SHM26085.1
Putative peptidoglycan binding domain-containing protein.
  
     0.684
SHM64424.1
Hypothetical protein.
  
     0.674
SHM10635.1
Hook-length control protein FliK.
  
     0.671
SHM16159.1
IPT/TIG domain-containing protein.
  
     0.655
SHM35972.1
Voltage-dependent anion channel.
 
     0.583
SHM36082.1
Na+/H+-dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.580
SHM36028.1
Alkylhydroperoxidase AhpD family core domain-containing protein.
       0.547
SHM76544.1
CRISPR-associated protein Csh1.
  
     0.532
SHM27696.1
SPFH domain, Band 7 family protein.
  
    0.525
SHM58504.1
O-antigen ligase.
  
     0.512
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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