STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM51041.1Copper transport outer membrane protein, MctB. (221 aa)    
Predicted Functional Partners:
SHM51072.1
Uncharacterized membrane-anchored protein.
 
  
 0.976
SHM51015.1
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.
 
     0.948
SHM50983.1
Protein of unknown function.
 
     0.934
SHM35851.1
Hypothetical protein.
 
     0.779
SHM50951.1
ADP-ribose pyrophosphatase.
       0.777
SHM50914.1
TIGR00375 family protein.
 
     0.772
SHM67427.1
TATA-box binding.
  
     0.721
SHM07442.1
Protein of unknown function.
  
     0.680
SHM53363.1
BofC C-terminal domain-containing protein.
  
     0.663
SHM49312.1
Hypothetical protein.
 
     0.659
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.