STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM52062.1Type IV pilus assembly protein PilC. (401 aa)    
Predicted Functional Partners:
SHM52094.1
Type IV pilus assembly protein PilB.
 
 0.991
SHM31038.1
Type II secretion system protein E (GspE).
 
 0.969
SHM51903.1
Type IV pilus assembly protein PilM.
 
 
 
 0.951
SHM52011.1
Tfp pilus assembly protein FimT.
  
  
 0.923
SHM52037.1
General secretion pathway protein G.
 
  
 0.919
SHM30944.1
General secretion pathway protein G.
 
  
 0.903
SHM30885.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A.
 
  
 0.891
SHM30762.1
Type IV pilus assembly protein PilM.
 
 
 
 0.882
SHM31006.1
Twitching motility protein PilT.
  
 0.873
SHM51979.1
Type II secretion system protein I.
  
  
 0.871
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.