STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM61341.1D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. (413 aa)    
Predicted Functional Partners:
SHM50830.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
  
 
0.884
SHM12087.1
Penicillin-binding protein 1A.
   
 
 0.880
SHM74308.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 
0.879
SHM06598.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 0.848
SHM64264.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.723
SHM61272.1
Uncharacterized membrane protein YcaP, DUF421 family.
       0.532
SHM61309.1
Hypothetical protein.
       0.532
SHM56472.1
Putative peptidoglycan binding domain-containing protein.
 
 
 0.523
SHM04691.1
Spore maturation protein B.
  
  
 0.509
SHM04661.1
Spore maturation protein A.
  
  
 0.505
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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