STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM74010.1ABC-2 type transport system permease protein. (264 aa)    
Predicted Functional Partners:
SHM73956.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.979
SHM74057.1
Signal transduction histidine kinase.
 
     0.930
SHM74032.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
    0.906
SHM73981.1
ABC-2 type transport system permease protein.
 
   
0.889
SHM74104.1
Bla regulator protein blaR1.
 
     0.712
SHM90959.1
C_GCAxxG_C_C family probable redox protein.
  
     0.497
SHM74080.1
BlaI family transcriptional regulator, penicillinase repressor.
       0.473
SHM37686.1
Hypothetical protein.
  
     0.449
SHM73934.1
PQQ-like domain-containing protein.
       0.449
SHM57999.1
Fluoroquinolone transport system ATP-binding protein.
 
 
 0.444
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.