Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM06415.1 | SHM15850.1 | SAMN05660826_00118 | SAMN05660826_00340 | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Arginine decarboxylase. | 0.625 |
SHM06415.1 | SHM18791.1 | SAMN05660826_00118 | SAMN05660826_00432 | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Arginine/lysine/ornithine decarboxylase. | 0.794 |
SHM06415.1 | SHM74606.1 | SAMN05660826_00118 | SAMN05660826_01836 | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Agmatinase; Belongs to the arginase family. | 0.906 |
SHM06415.1 | SHM84788.1 | SAMN05660826_00118 | SAMN05660826_02138 | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.877 |
SHM06415.1 | argJ | SAMN05660826_00118 | SAMN05660826_01903 | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.974 |
SHM06415.1 | speE | SAMN05660826_00118 | SAMN05660826_01835 | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.855 |
SHM15850.1 | SHM06415.1 | SAMN05660826_00340 | SAMN05660826_00118 | Arginine decarboxylase. | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.625 |
SHM15850.1 | SHM18791.1 | SAMN05660826_00340 | SAMN05660826_00432 | Arginine decarboxylase. | Arginine/lysine/ornithine decarboxylase. | 0.799 |
SHM15850.1 | SHM74606.1 | SAMN05660826_00340 | SAMN05660826_01836 | Arginine decarboxylase. | Agmatinase; Belongs to the arginase family. | 0.938 |
SHM15850.1 | argD | SAMN05660826_00340 | SAMN05660826_01901 | Arginine decarboxylase. | acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.625 |
SHM15850.1 | speE | SAMN05660826_00340 | SAMN05660826_01835 | Arginine decarboxylase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.968 |
SHM18791.1 | SHM06415.1 | SAMN05660826_00432 | SAMN05660826_00118 | Arginine/lysine/ornithine decarboxylase. | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.794 |
SHM18791.1 | SHM15850.1 | SAMN05660826_00432 | SAMN05660826_00340 | Arginine/lysine/ornithine decarboxylase. | Arginine decarboxylase. | 0.799 |
SHM18791.1 | SHM74606.1 | SAMN05660826_00432 | SAMN05660826_01836 | Arginine/lysine/ornithine decarboxylase. | Agmatinase; Belongs to the arginase family. | 0.909 |
SHM18791.1 | argD | SAMN05660826_00432 | SAMN05660826_01901 | Arginine/lysine/ornithine decarboxylase. | acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.774 |
SHM18791.1 | speE | SAMN05660826_00432 | SAMN05660826_01835 | Arginine/lysine/ornithine decarboxylase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.915 |
SHM34338.1 | SHM74606.1 | SAMN05660826_00790 | SAMN05660826_01836 | Glutamate formiminotransferase. | Agmatinase; Belongs to the arginase family. | 0.969 |
SHM34338.1 | hutI | SAMN05660826_00790 | SAMN05660826_00789 | Glutamate formiminotransferase. | Imidazolonepropionase. | 0.979 |
SHM68188.1 | SHM74606.1 | SAMN05660826_01679 | SAMN05660826_01836 | Uncharacterized conserved protein YqhQ. | Agmatinase; Belongs to the arginase family. | 0.858 |
SHM74606.1 | SHM06415.1 | SAMN05660826_01836 | SAMN05660826_00118 | Agmatinase; Belongs to the arginase family. | Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.906 |
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