Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM74536.1 | SHM74561.1 | SAMN05660826_01833 | SAMN05660826_01834 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Amino-acid N-acetyltransferase. | 0.750 |
SHM74536.1 | SHM74606.1 | SAMN05660826_01833 | SAMN05660826_01836 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Agmatinase; Belongs to the arginase family. | 0.589 |
SHM74536.1 | SHM74626.1 | SAMN05660826_01833 | SAMN05660826_01837 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Iron complex transport system ATP-binding protein. | 0.477 |
SHM74536.1 | SHM74651.1 | SAMN05660826_01833 | SAMN05660826_01838 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.569 |
SHM74536.1 | SHM74674.1 | SAMN05660826_01833 | SAMN05660826_01839 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.550 |
SHM74536.1 | SHM74719.1 | SAMN05660826_01833 | SAMN05660826_01841 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 1-acyl-sn-glycerol-3-phosphate acyltransferase. | 0.459 |
SHM74536.1 | cmk | SAMN05660826_01833 | SAMN05660826_01840 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.949 |
SHM74536.1 | fni | SAMN05660826_01833 | SAMN05660826_01843 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.495 |
SHM74536.1 | ispH | SAMN05660826_01833 | SAMN05660826_01842 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.599 |
SHM74536.1 | speE | SAMN05660826_01833 | SAMN05660826_01835 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.601 |
SHM74561.1 | SHM74536.1 | SAMN05660826_01834 | SAMN05660826_01833 | Amino-acid N-acetyltransferase. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.750 |
SHM74561.1 | SHM74606.1 | SAMN05660826_01834 | SAMN05660826_01836 | Amino-acid N-acetyltransferase. | Agmatinase; Belongs to the arginase family. | 0.683 |
SHM74561.1 | SHM74626.1 | SAMN05660826_01834 | SAMN05660826_01837 | Amino-acid N-acetyltransferase. | Iron complex transport system ATP-binding protein. | 0.489 |
SHM74561.1 | SHM74651.1 | SAMN05660826_01834 | SAMN05660826_01838 | Amino-acid N-acetyltransferase. | Hypothetical protein. | 0.459 |
SHM74561.1 | SHM74674.1 | SAMN05660826_01834 | SAMN05660826_01839 | Amino-acid N-acetyltransferase. | Hypothetical protein. | 0.428 |
SHM74561.1 | SHM74719.1 | SAMN05660826_01834 | SAMN05660826_01841 | Amino-acid N-acetyltransferase. | 1-acyl-sn-glycerol-3-phosphate acyltransferase. | 0.412 |
SHM74561.1 | cmk | SAMN05660826_01834 | SAMN05660826_01840 | Amino-acid N-acetyltransferase. | Cytidylate kinase. | 0.436 |
SHM74561.1 | speE | SAMN05660826_01834 | SAMN05660826_01835 | Amino-acid N-acetyltransferase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.596 |
SHM74606.1 | SHM74536.1 | SAMN05660826_01836 | SAMN05660826_01833 | Agmatinase; Belongs to the arginase family. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.589 |
SHM74606.1 | SHM74561.1 | SAMN05660826_01836 | SAMN05660826_01834 | Agmatinase; Belongs to the arginase family. | Amino-acid N-acetyltransferase. | 0.683 |
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