STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM79299.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (620 aa)    
Predicted Functional Partners:
SHM89328.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.996
SHM36753.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.989
SHM43535.1
Diguanylate cyclase with GAF sensor.
 
0.976
SHM07277.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 
 0.968
SHM58062.1
Phosphonate transport system substrate-binding protein.
 
 0.957
SHM08583.1
Serine/threonine protein kinase.
 
 
 0.947
SHM56643.1
Two-component system, chemotaxis family, response regulator CheY.
  
 
 0.941
SHM74974.1
Tfp pilus assembly protein PilF.
    
 0.935
SHM15127.1
S-layer homology domain-containing protein.
  
 
 0.932
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.928
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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