STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM79327.1FIST C domain-containing protein. (388 aa)    
Predicted Functional Partners:
SHM79299.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.921
SHM79359.1
Uncharacterized protein family (UPF0051).
       0.773
SHM79384.1
Fe-S cluster assembly ATP-binding protein.
       0.773
SHM25164.1
Natural resistance-associated macrophage protein.
  
     0.648
SHM89328.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
  
 0.582
SHM07277.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
  
    0.535
SHM17179.1
Two-component system, OmpR family, response regulator VicR.
  
    0.535
SHM72751.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
    0.535
SHM74032.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
    0.535
SHM91175.1
Two component transcriptional regulator, winged helix family.
  
    0.535
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.