STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM80194.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
SHM80244.1
UbiD family decarboxylase; Belongs to the UbiD family.
 
  
 0.958
SHM80338.1
Pyruvate ferredoxin oxidoreductase delta subunit.
 
     0.794
SHM80217.1
Hypothetical protein.
       0.784
ubiX
4-hydroxy-3-polyprenylbenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
  
 0.783
SHM80267.1
Acetyltransferase.
       0.762
SHM80292.1
Pyruvate ferredoxin oxidoreductase beta subunit.
       0.762
SHM80316.1
Pyruvate ferredoxin oxidoreductase, alpha subunit.
       0.762
SHM80364.1
Pyruvate ferredoxin oxidoreductase gamma subunit.
       0.762
SHM59325.1
4-hydroxy-3-polyprenylbenzoate decarboxylase; Belongs to the UbiD family.
    
 0.733
SHM19954.1
Hypothetical protein.
  
     0.572
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.