STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM80468.1Tripartite ATP-independent transporter solute receptor, DctP family. (347 aa)    
Predicted Functional Partners:
SHM80412.1
C4-dicarboxylate transporter, DctM subunit.
  
 0.980
SHM29101.1
TRAP transporter, DctM subunit.
  
 0.958
SHM16467.1
TRAP transporter, DctM subunit.
  
 0.946
SHM80442.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.912
SHM16496.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.842
SHM37413.1
TRAP transporter, DctM subunit.
  
 0.831
SHM29133.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.739
SHM09921.1
Two-component system, CitB family, sensor histidine kinase DctS.
    
 0.587
SHM80385.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.486
SHM37434.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.447
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.