STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM83715.1Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (348 aa)    
Predicted Functional Partners:
SHM83700.1
Iron complex transport system substrate-binding protein.
 
 0.998
SHM15404.1
Iron complex transport system ATP-binding protein.
 0.994
SHM74626.1
Iron complex transport system ATP-binding protein.
 0.992
SHM15466.1
Iron complex transport system substrate-binding protein.
 
 0.987
SHM07845.1
Putative iron-only hydrogenase system regulator.
  
 0.946
SHM83730.1
Adenosylcobinamide kinase.
     
 0.776
cobS
Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
 
  
 0.764
SHM83745.1
Threonine kinase.
       0.730
cobD
Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
     
 0.725
SHM83761.1
L-threonine O-3-phosphate decarboxylase.
  
  
 0.697
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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