STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM86701.1Purine catabolism regulatory protein. (562 aa)    
Predicted Functional Partners:
SHM09921.1
Two-component system, CitB family, sensor histidine kinase DctS.
  
     0.579
SHM86776.1
N-methylhydantoinase A.
 
     0.559
SHM86750.1
Hydantoinase/oxoprolinase N-terminal region.
 
     0.555
SHM86803.1
N-methylhydantoinase B.
 
     0.553
SHM86726.1
Permease for cytosine/purines, uracil, thiamine, allantoin.
       0.500
SHM86677.1
Cytosine permease.
       0.470
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.437
SHM09950.1
Two-component system, CitB family, response regulator MalR.
  
     0.420
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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