STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM87576.1Tetratricopeptide repeat-containing protein. (986 aa)    
Predicted Functional Partners:
SHM87794.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.990
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.925
SHM87702.1
Glycosyltransferase, GT2 family.
  
  
 0.846
SHM87602.1
ABC-2 type transport system permease protein.
  
  
 0.843
SHM87629.1
ABC-2 type transport system ATP-binding protein.
  
  
 0.826
SHM74974.1
Tfp pilus assembly protein PilF.
 
 
 0.820
SHM89328.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.787
SHM07659.1
Putative membrane fusion protein.
  
  
 0.781
SHM38344.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.747
SHM17047.1
YycH protein.
  
     0.734
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.