STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM88791.1Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily. (319 aa)    
Predicted Functional Partners:
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.860
SHM88813.1
PTS system, cellobiose-specific IIA component.
 
     0.818
SHM88766.1
PTS system, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
     0.794
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.774
SHM88721.1
PTS system, cellobiose-specific IIB component.
 
     0.735
SHM64587.1
Aspartate kinase; Belongs to the aspartokinase family.
     
 0.688
SHM88838.1
Lichenan operon transcriptional antiterminator.
 
     0.635
SHM20078.1
Cyanophycinase; Belongs to the peptidase S51 family.
 
  
 0.612
SHM15729.1
L-asparaginase.
     
 0.550
SHM20110.1
Cyanophycin synthetase.
 
   
 0.547
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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