STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM89526.1Uncharacterized protein YPO0396. (1118 aa)    
Predicted Functional Partners:
SHM89477.1
Hypothetical protein.
 
     0.957
SHM89501.1
Protein of unknown function.
 
     0.957
SHM89547.1
Hypothetical protein.
 
     0.957
SHM89437.1
HEPN domain-containing protein.
       0.709
SHM89453.1
Predicted nucleotidyltransferase.
       0.709
dapB-2
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.661
SHM16159.1
IPT/TIG domain-containing protein.
  
     0.584
SHM64424.1
Hypothetical protein.
  
     0.512
SHM89415.1
D-aminopeptidase.
       0.497
SHM45815.1
Protein of unknown function.
  
     0.434
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.