STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM90981.1Sigma 54 modulation protein. (988 aa)    
Predicted Functional Partners:
SHM28514.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
 
 0.979
SHM39031.1
PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.1)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.1).
  
 
 0.939
SHM88838.1
Lichenan operon transcriptional antiterminator.
 
 
0.923
SHM83560.1
PTS system IIC component, Gat family.
 
 
 0.838
SHM81446.1
PTS system, mannose-specific IIA component.
 
 
 0.830
SHM83580.1
PTS system IIB component, Gat family (TC 4.A.5).
 
 
 0.825
SHM20488.1
Mannitol operon transcriptional antiterminator.
 
 
 0.795
SHM37608.1
Transcriptional antiterminator, BglG family.
 
 
0.740
SHM37539.1
PTS system, ascorbate-specific IIB component.
 
 
 0.732
SHM04221.1
Phosphocarrier protein.
  
 
 0.723
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.