STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM92225.1CRISPR/Cas system CSM-associated protein Csm3, group 7 of RAMP superfamily. (225 aa)    
Predicted Functional Partners:
SHM92204.1
Hypothetical protein.
 
 
 0.992
SHM86398.1
CRISPR-associated protein Csm4.
 
 
 0.963
SHM92269.1
CRISPR/Cas system CSM-associated protein Csm3, group 7 of RAMP superfamily.
 
     0.957
SHM86321.1
CRISPR-associated protein Csm2.
  
 
 0.952
SHM92312.1
CRISPR-associated protein.
 
     0.952
SHM92249.1
CRISPR-associated protein Csx10.
 
    0.949
SHM86420.1
CRISPR-associated protein, Csm5 family.
 
 
 0.948
SHM86305.1
CRISPR-associated protein Csm1.
 
 
 0.853
SHM92179.1
Protein of unknown function.
       0.817
SHM92291.1
CRISPR-associated protein, TIGR03984 family.
       0.741
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.