STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCK43963.1DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
OCK43962.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   0.954
OCK44409.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.851
OCK42254.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  0.834
OCK43479.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.829
OCK42032.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  0.827
OCK43171.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.826
OCK42650.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.824
OCK42798.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.823
OCK41881.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.821
OCK43512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.818
Your Current Organism:
Tenacibaculum soleae
NCBI taxonomy Id: 447689
Other names: CECT 7292, NCIMB 14368, T. soleae, Tenacibaculum soleae Pineiro-Vidal et al. 2008, strain LL04 12.1.7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.