Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OCK42853.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (788 aa)    
Predicted Functional Partners:
OCK42852.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
OCK42855.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.957
OCK42854.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
OCK43581.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.842
OCK42851.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
OCK42874.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.823
OCK43582.1
Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.803
OCK44134.1
Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.772
OCK43977.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.771
OCK42954.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.752
Your Current Organism:
Tenacibaculum soleae
NCBI taxonomy Id: 447689
Other names: CECT 7292, NCIMB 14368, T. soleae, Tenacibaculum soleae Pineiro-Vidal et al. 2008, strain LL04 12.1.7
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