STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0165ABC transporter permease. (257 aa)    
Predicted Functional Partners:
Lery_0164
ABC transporter ATP binding protein.
 
 0.992
Lery_1550
ABC transporter ATP-binding protein.
  
 
 0.765
Lery_0163
2OG-Fe(II) oxygenase.
       0.763
Lery_1926
Nitroreductase.
  
  
 0.748
ftsE
Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.689
Lery_1668
Polyketide synthase module.
  
  
 0.624
Lery_0162
Hypothetical protein.
       0.599
Lery_1974
Polysaccharide ABC transporter, permease protein.
    
  0.571
ugpA
Sn-glycerol-3-phosphate transmembrane ABC transporter.
     
 0.538
queF
GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.533
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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