Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0176ABC transporter. (699 aa)    
Predicted Functional Partners:
Lery_0175
Hemolysin D.
 
 0.985
Lery_0173
Hypothetical protein.
 
     0.881
Lery_0174
Hypothetical protein.
       0.808
lssD_1
Secretion system protein D.
  
 0.696
Lery_0529
Hypothetical protein.
 
  0.691
lssD_2
Secretion system protein D.
  
 0.652
lssD_3
Secretion system protein D.
  
 0.613
Lery_0172
Hypothetical protein.
       0.579
Lery_0068
Outer membrane protein TolC.
  
 
 0.549
Lery_1603
Multidrug resistance ABC transporter ATP binding protein.
  
 
 
0.541
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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