Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0193KQDN repeat-containing protein. (544 aa)    
Predicted Functional Partners:
Lery_0188
Hypothetical protein.
 
  
 0.980
Lery_0191
Hypothetical protein.
 
 
 0.980
Lery_0190
Hypothetical protein.
 
   
 0.971
Lery_0189
Hypothetical protein.
 
   
 0.969
Lery_0192
TPR repeat containing protein.
 
 
 0.955
moxR
Methanol dehydrogenase regulatory protein.
 
  
 0.921
Lery_0194
Amidase; Belongs to the amidase family.
       0.866
Lery_0634
Hypothetical protein.
   
 
 0.656
ctpA_1
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
 
 0.656
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.655
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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