Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lery_0197Ribonuclease, T2 family; Belongs to the RNase T2 family. (322 aa)    
Predicted Functional Partners:
Lery_0198
Hypothetical protein.
 
     0.775
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.719
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.719
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
    
   0.719
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.719
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.719
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.719
yhbH
Ribosome-associated, sigma 54 modulation protein.
    
   0.719
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
    
   0.719
rplQ
50S ribosomal protein L17.
    
   0.719
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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