Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lery_0189 | Lery_0190 | Lery_0189 | Lery_0190 | Hypothetical protein. | Hypothetical protein. | 0.951 |
Lery_0189 | bchD | Lery_0189 | Lery_1656 | Hypothetical protein. | Magnesium-chelatase 60 kDa subunit. | 0.902 |
Lery_0189 | cobN | Lery_0189 | Lery_1658 | Hypothetical protein. | Aerobic cobaltochelatase subunit CobN. | 0.731 |
Lery_0189 | tpm | Lery_0189 | Lery_0208 | Hypothetical protein. | Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family. | 0.685 |
Lery_0190 | Lery_0189 | Lery_0190 | Lery_0189 | Hypothetical protein. | Hypothetical protein. | 0.951 |
Lery_0190 | bchD | Lery_0190 | Lery_1656 | Hypothetical protein. | Magnesium-chelatase 60 kDa subunit. | 0.945 |
Lery_0190 | cobN | Lery_0190 | Lery_1658 | Hypothetical protein. | Aerobic cobaltochelatase subunit CobN. | 0.761 |
Lery_0190 | tpm | Lery_0190 | Lery_0208 | Hypothetical protein. | Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family. | 0.776 |
Lery_0319 | Lery_1668 | Lery_0319 | Lery_1668 | Hypothetical protein. | Polyketide synthase module. | 0.996 |
Lery_0319 | tpm | Lery_0319 | Lery_0208 | Hypothetical protein. | Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family. | 0.655 |
Lery_1668 | Lery_0319 | Lery_1668 | Lery_0319 | Polyketide synthase module. | Hypothetical protein. | 0.996 |
Lery_1668 | bchD | Lery_1668 | Lery_1656 | Polyketide synthase module. | Magnesium-chelatase 60 kDa subunit. | 0.588 |
Lery_1668 | cysC | Lery_1668 | Lery_1957 | Polyketide synthase module. | Elongation factor Tu (EF-Tu); Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | 0.507 |
Lery_1668 | glmS | Lery_1668 | Lery_0207 | Polyketide synthase module. | Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.583 |
Lery_1668 | tpm | Lery_1668 | Lery_0208 | Polyketide synthase module. | Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family. | 0.866 |
Lery_1668 | ubiB | Lery_1668 | Lery_0746 | Polyketide synthase module. | Ubiquinone biosynthesis protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.563 |
bchD | Lery_0189 | Lery_1656 | Lery_0189 | Magnesium-chelatase 60 kDa subunit. | Hypothetical protein. | 0.902 |
bchD | Lery_0190 | Lery_1656 | Lery_0190 | Magnesium-chelatase 60 kDa subunit. | Hypothetical protein. | 0.945 |
bchD | Lery_1668 | Lery_1656 | Lery_1668 | Magnesium-chelatase 60 kDa subunit. | Polyketide synthase module. | 0.588 |
bchD | cobN | Lery_1656 | Lery_1658 | Magnesium-chelatase 60 kDa subunit. | Aerobic cobaltochelatase subunit CobN. | 0.996 |
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