Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0285Hemolysin D. (331 aa)    
Predicted Functional Partners:
Lery_0284
P-hydroxybenzoic acid efflux subunit AaeB.
 
 
 0.976
Lery_1912
Outer membrane efflux protein.
 
 0.894
Lery_2250
ABC transporter permease.
 
 
 0.733
Lery_1913
RND multidrug efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.684
Lery_2275
Agglutination protein.
 
 0.674
Lery_0068
Outer membrane protein TolC.
 
 0.648
helC_1
HelC protein.
  
 0.628
helC_2
HelC protein.
  
 0.628
cebC
Chemiosmotic efflux system B protein C.
  
 0.628
cecC_2
Chemiosmotic efflux system C protein C.
  
 0.628
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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