Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0288Hypothetical protein. (248 aa)    
Predicted Functional Partners:
Lery_0287
Hypothetical protein.
       0.866
Lery_0289
Hypothetical protein.
       0.778
Lery_2107
Pre-pilin leader sequence (pilV).
  
  
 0.773
Lery_2110
Type IV fimbrial biogenesis PilY1-like protein.
  
  
 0.749
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.735
Lery_0291
Pterin-4-alpha-carbinolamine dehydratase.
       0.735
pilE_1
Type-IV pilin.
  
  
 0.690
Lery_2109
Tfp pilus assembly protein PilX.
  
  
 0.687
Lery_0284
P-hydroxybenzoic acid efflux subunit AaeB.
       0.470
mltA_1
Membrane-bound lytic murein transglycosylase; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.470
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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