Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Lery_0291Pterin-4-alpha-carbinolamine dehydratase. (112 aa)    
Predicted Functional Partners:
Lery_0435
Phenylalanine-4-hydroxylase.
 
 0.993
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.867
lly
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.848
Lery_0287
Hypothetical protein.
       0.735
Lery_0288
Hypothetical protein.
       0.735
hmgA
Homogentisate 1,2-dioxygenase.
  
  
 0.649
Lery_2432
Oxidoreductase, FAD-binding protein.
   
 
 0.544
Lery_1926
Nitroreductase.
   
 
  0.542
Lery_0289
Hypothetical protein.
       0.527
Lery_1668
Polyketide synthase module.
  
 
 0.503
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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