Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0318Hypothetical protein. (198 aa)    
Predicted Functional Partners:
Lery_0319
Hypothetical protein.
       0.780
Lery_0316
Integral membrane protein.
       0.773
Lery_0317
Oxidoreductase.
       0.773
Lery_2143
Sensory histidine-kinase / response regulator.
     
 0.749
Lery_0601
Type II/III secretion system protein.
  
     0.654
Lery_0075
IcmL-like protein.
  
    0.641
cysK
Cystathionine beta synthase.
  
 
 0.621
Lery_2070
DamX-related protein.
  
     0.614
Lery_0311
AAA domain (dynein-related subfamily).
  
     0.608
gacS/letS
Transmission sensor LetS.
     
 0.597
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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