Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0323Protein with a bacterial immunoglobulin-like domain protein. (142 aa)    
Predicted Functional Partners:
trxA
Thioredoxin.
    
   0.633
trxA3
Thioredoxin; Belongs to the thioredoxin family.
    
   0.633
Lery_2759
Putative thioredoxin 1; Belongs to the thioredoxin family.
    
   0.633
ctpA_2
Cation efflux transporter.
   
  
 0.615
Lery_1204
Hypothetical protein.
   
    0.610
Lery_1205
Hypothetical protein; Belongs to the UPF0276 family.
   
    0.610
Lery_1699
Coiled-coil protein.
   
 
 0.481
rtxA-2
Structural toxin protein RtxA.
   
 
 0.481
Lery_0322
Putative SEC-C motif domain protein.
       0.471
Lery_2886
Hypothetical protein.
   
 
  0.402
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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